How Would You Display/Store These?

Whatever you do, do not remove them.

Well, some people are big on "presentation". It's the same as whether or not to pop the coin out of a slab. If you think you'll try to move it on (out) to somebody else keep it in the case. If it's going to be a part of your collection treat it as other coins in your collection, i.e. put them in 2x2's. Just make sure you handle the coins with proper care if they're proofs or BUs.

For this set I would also agree that the holder is a very large part of any future value.

Thank you everyone. I got the answer to my original question and that was do I ruin some value by removing them. You all have made it pretty clear even for my thickness that the answer is yes I will. However, since I collect for the fun of collecting (building my house to my specs) I think I have my decision. I may look for a way to get these into my binder and still leave them in this case but if not... I may be throwing money away here but the future resale value means very little to me. And maybe that is the difference between collecting dark side common vs. US silver. Heck, I'm facing this same dilemma as I reevaluate my stamp collecting. I have hundreds in catalog value but no one wants them for even face value. I'm not so sure that I'm not going to find that same issue 20 years from now with these or any of my coins.